PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000620001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 106aa    MW: 12531.1 Da    PI: 10.928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.8e-086595135
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                       + y+GVr++   + Wv+e+r+p   +k+ r++lg+
  GSVIVT01000620001 65 PVYRGVRRRN-GNMWVCELREP---NKKSRIWLGT 95
                       68****9777.899*******8...347******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.1276697IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-66695IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-126695IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDFFNQFCNS YPFPSDSHSV STPESSSASD WQTRRTIQSD EEVLRASDRP KKRACRRKFK  60
ETRHPVYRGV RRRNGNMWVC ELREPNKKSR IWLGTTPWRL GGKYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.277023e-68flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4398451e-151AM439845.2 Vitis vinifera contig VV78X197307.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276153.15e-62PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9LN862e-23DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA5BVG95e-62A5BVG9_VITVI; Putative uncharacterized protein
TrEMBLF6HUI04e-62F6HUI0_VITVI; Putative uncharacterized protein
STRINGVIT_02s0025g04460.t011e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.19e-25ERF family protein